TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= query SelS_C.intestinalis.fa
         (204 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp...    34   0.033
dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, comp...    33   0.057
dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, comp...    32   0.22 
dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, compl...    31   0.28 
dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, comp...    29   1.1  
dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, compl...    28   2.4  
dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, comp...    27   4.1  
dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp...    27   4.1  
dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, compl...    27   5.3  
dbj|AP006488.2| Cyanidioschyzon merolae DNA, chromosome 6, compl...    27   5.3  
dbj|AP006489.2| Cyanidioschyzon merolae DNA, chromosome 7, compl...    27   5.3  
dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, comp...    27   5.3  
dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp...    27   5.3  
dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, comp...    27   7.0  
dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, comp...    27   7.0  

>dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete
              sequence
          Length = 908485

 Score = 34.3 bits (77), Expect = 0.033
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
 Frame = +3

Query: 98     ERARKKLQDRHDAAAREHEERLREQEE-------QKRMQKINDHDALKAGKTQSK----- 145
              ER RKK    HD    +H+ +L E +E       ++R +K ND +  + G   S+     
Sbjct: 614646 ERCRKKRHGNHDDQDHDHDSQLLETKESYLLLVRRERPKKPNDSNRTQTGVWASRRPPSD 614825

Query: 146    -TSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSAR 190
                ++++  +     A    ++R K SK L       LGG    + R
Sbjct: 614826 PLARRVSPQRQEKHARSEALERRKLSKDLLVWTARVLGGNECGAHR 614963



 Score = 28.9 bits (63), Expect = 1.4
 Identities = 20/89 (22%), Positives = 34/89 (38%)
 Frame = -2

Query: 116    EERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRS 175
              E R  E +  +RM+ +               ++     P+ +Q T +    N+E++    
Sbjct: 850506 EPRTTELDAPERMELVGPVSDPNNDTVPGAAAEHSASNPEASQETATSTSTNQEAE---- 850339

Query: 176    SDFSPLGGGPSNSARWRPGNSRPSAGGUG 204
                       PSN+    P  S PS+GG G
Sbjct: 850338 --------APSNATNGGPAASAPSSGGTG 850276



 Score = 26.6 bits (57), Expect = 7.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 80     DDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHE 116
              D    +TP ++ A S A  R R+K   R   + R H+
Sbjct: 818095 DAGTRLTPAELAACSAARRRVRRKSSSRRSDSERSHQ 817985


>dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, complete genome, complete
              sequence
          Length = 866983

 Score = 33.5 bits (75), Expect = 0.057
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
 Frame = -1

Query: 98     ERARKKLQDRHDAAAREHEERLREQEEQ----KRMQKINDHDALKAGKTQSKTS--KKLD 151
              E A  K +   +   R+  ERLREQ EQ    +R++++ + D  +  + Q   +  + ++
Sbjct: 717787 EIAEAKRKAEEERRKRDIRERLREQREQQMERERLRRLLEDDRQRRLELQRGPTPVRLVE 717608

Query: 152    QKPDPNQATQSHIKRNK-ESKPLR 174
              Q PDPN      +++++ E++P R
Sbjct: 717607 QPPDPNTNQPKAVEKSELETRPTR 717536


>dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, complete genome, complete
              sequence
          Length = 1232258

 Score = 31.6 bits (70), Expect = 0.22
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
 Frame = -1

Query: 106    DRHDA-AAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHI 164
              D H A + R H      Q   + +Q+  DHD  +AG           Q+ DP     + +
Sbjct: 267617 DPHGAYSGRAHAHAHAVQSAGESVQRNADHD--EAGH----------QEGDPRWRYPAQL 267474

Query: 165    KRNKESKPLRSSDFSPLGGGPSNSARWRPGNSRPSAGGUG 204
               R+  +  ++S D +  GGG  + AR RP   RP + G G
Sbjct: 267473 VRSVYAPAVQSGDANSAGGGRCDGARPRP---RPLSHGNG 267363



 Score = 31.6 bits (70), Expect = 0.22
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
 Frame = -3

Query: 106    DRHDA-AAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHI 164
              D H A + R H      Q   + +Q+  DHD  +AG           Q+ DP     + +
Sbjct: 261240 DPHGAYSGRAHAHAHAVQSAGESVQRNADHD--EAGH----------QEGDPRWRYPAQL 261097

Query: 165    KRNKESKPLRSSDFSPLGGGPSNSARWRPGNSRPSAGGUG 204
               R+  +  ++S D +  GGG  + AR RP   RP + G G
Sbjct: 261096 VRSVYAPAVQSGDANSAGGGRCDGARPRP---RPLSHGNG 260986



 Score = 30.8 bits (68), Expect = 0.37
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = -2

Query: 121    EQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSP 180
              + + +K  QK   HD  +   ++  +S K  +K  PN+  Q   K+N E+ P   S   P
Sbjct: 196774 QPDTEKEAQK--PHDPPRCKISRESSSGKRPKKKKPNEKKQKTRKKNSETSP---SQVIP 196610

Query: 181    LGGGPSNSARWRPGNSRPS 199
                G P+ +   R     P+
Sbjct: 196609 RKGTPAGTQESRHPTQSPT 196553


>dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, complete genome, complete
              sequence
          Length = 528682

 Score = 31.2 bits (69), Expect = 0.28
 Identities = 25/100 (25%), Positives = 45/100 (45%)
 Frame = -1

Query: 100    ARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQA 159
              + ++L    D+   +  +R  E+E QK       HD LK   T+  +S K  +K   ++ 
Sbjct: 462181 SNEELIQVEDSTIGKETQRGTEKETQK------PHDPLKCKITRESSSGKSPKKK*TSKK 462020

Query: 160    TQSHIKRNKESKPLRSSDFSPLGGGPSNSARWRPGNSRPS 199
               Q + K+N ++ P   S   P  G P+ +   R  +  P+
Sbjct: 462019 KQKNRKKNSQTSP---SQGIPRKGTPAGTQESRRQSQAPA 461909


>dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, complete genome, complete
              sequence
          Length = 852849

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 22/87 (25%), Positives = 33/87 (37%)
 Frame = -3

Query: 88     EQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTS 147
              EQ  AR V  E    +L D H  A    +      +E   + +I+    + A    +  S
Sbjct: 528862 EQCTARRVLAELLSLELDDEHPEAREHSKPGDTMDQEACTLSEIDSTRQVPAPALLANRS 528683

Query: 148    KKLDQKPDPNQATQSHIKRNKESKPLR 174
                 D+KP P  A      R +  + LR
Sbjct: 528682 AANDEKPSPQSADHEPQTRLRARRRLR 528602


>dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, complete genome, complete
              sequence
          Length = 810151

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 24/80 (30%), Positives = 35/80 (43%)
 Frame = +2

Query: 90     VEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKK 149
              +EA S A+ +  K L D H   A  HE       ++ R +K + HD  K    Q      
Sbjct: 253178 IEAVS-ALAQEHKALFDEHHDGADRHE------SQKSRNEKQDAHDISKLAFAQ------ 253318

Query: 150    LDQKPDPNQATQSHIKRNKE 169
                Q  + N+  QSHI R+ +
Sbjct: 253319 -PQVHEANEYRQSHIHRHTQ 253375



 Score = 26.6 bits (57), Expect = 7.0
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 12/109 (11%)
 Frame = -1

Query: 48     WFLLFGFVAAMFVWTNIEKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDR 107
              W++  G  AA FVW +I + + +L+ +R   Y  +   T     ARS    R     Q  
Sbjct: 369991 WYIALGTHAA-FVW*SIHRGICSLYSQRFALYYHSCRCTIHAQLARS----RC*ALDQRV 369827

Query: 108    HDAAAR----------EHEE--RLREQEEQKRMQKINDHDALKAGKTQS 144
              HD AA            H +  RLR+  +     KIN   A  AG   +
Sbjct: 369826 HDIAAAADPCVEYRRGTHRDCRRLRQAGKAASDSKINRCTASAAGSASA 369680


>dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, complete genome, complete
              sequence
          Length = 1282939

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 14/68 (20%), Positives = 33/68 (48%)
 Frame = -1

Query: 32     MMSVFNQGLAFLQAYGWFLLFGFVAAMFVWTNIEKSVKNLFGRRKTYYDDTENMTPEQVE 91
              ++++   G  +L     FL   ++  MF+     +++KN+   +KT    T ++    +E
Sbjct: 776125 VLTLIENGACWLLVLQPFLTPSYILPMFIGDTEAQAIKNVRSGQKTARPGTHDLAKNALE 775946

Query: 92     ARSVAMER 99
              A ++ + R
Sbjct: 775945 ACNIRVVR 775922



 Score = 26.2 bits (56), Expect = 9.1
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 13/43 (30%)
 Frame = -3

Query: 97     MERARKKLQDRHDAAAREHEE-------------RLREQEEQK 126
              ++++ K  Q RHDA+ REH +             R RE +EQ+
Sbjct: 398993 LDKSEKYWQSRHDASTREHCKEYHG*HFWKQLW*RCREHDEQR 398865


>dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, complete genome, complete
              sequence
          Length = 1621617

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
 Frame = -1

Query: 115    HEERLREQEEQK---------------RMQKINDHDALKAGKTQSKTSKKLDQKPDPNQA 159
              HE R +++E  K               R  +I +HD LKAG    K+ +K   + +P  A
Sbjct: 637791 HEIRRKQEEAAKSWL*RCHQHPSTAGNRAGRIGEHDVLKAG---DKSGEKNQSQKNPALA 637621

Query: 160    TQSH-IKRNKESK 171
                 H +KR K S+
Sbjct: 637620 GVDHNVKR*KHSR 637582



 Score = 26.6 bits (57), Expect = 7.0
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
 Frame = +1

Query: 109   DAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNK 168
             D+A  +  +   E+E QK       HD      T+  +S K  +K   N+  Q + K+N 
Sbjct: 28351 DSAIGKETQGDTEEETQK------PHDPRTRRITRESSSAKSPKKKKTNKKRQKNRKKNS 28512

Query: 169   ESKPLR--SSDFSPLGGGPSNSARWRPGNS 196
             ++ P +  S   +P G   S      P +S
Sbjct: 28513 QTSPSQVISRKGTPAGTQESRRQTQSPTHS 28602



 Score = 26.6 bits (57), Expect = 7.0
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
 Frame = +3

Query: 82      TENMTPEQVEARSVAMERARKKLQDR----HDAAAREHEERLREQEEQKRMQKINDHDAL 137
               T  +  + V  R  +  R R +   R    HDAA R+H E +R    ++ + +I   DA 
Sbjct: 1145577 TGTLVSKAVTRRRESSARRRNRCGTRPHSSHDAAIRKHAEGVR----RRSLCQILHQDAS 1145744

Query: 138     KAGKTQSKTSKKLDQKPD--PNQATQSHIK-RNKESK 171
               +    +   S  L ++P    + A +SH + R+ ESK
Sbjct: 1145745 RCCHYRM*ISSSLKKEPSGPASLADRSHCQMRSPESK 1145855


>dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, complete genome, complete
             sequence
          Length = 481791

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
 Frame = +1

Query: 109   DAAAREHEERLREQEEQKRM----QKINDHDALKAGKTQSKTSKKLDQKPDPNQ------ 158
             D A    EE LR     + +    Q +++ +A  A      T+++ D++ +  Q      
Sbjct: 99745 DGAIACWEENLRRHNCDEFLDRFHQALHNIEAAPANPAVETTTEERDKEAEEVQNVRVHA 99924

Query: 159   -------ATQSHIKRNKESKPLRSSDFSPLGGGPSNSARWRPGNSRP 198
                    A   HI+    S  + S+  SP  GG +  A W+ G  RP
Sbjct: 99925 HPWQETMAINKHIEALATSVAILSNALSPSFGGVNQFALWKRGFFRP 100065


>dbj|AP006488.2| Cyanidioschyzon merolae DNA, chromosome 6, complete genome, complete
             sequence
          Length = 536163

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
 Frame = +3

Query: 40    LAFLQAYGWFLLFGFVAAMFVWTNIEKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMER 99
             LAF  A+ WF+   FVA  F     EK     +GR+          +P + + ++ A  R
Sbjct: 54354 LAFSSAFSWFIAEAFVAGSFSKIKKEKP----WGRKWRIR*ARRRRSP-KTKTKNTAKPR 54518

Query: 100   ARK--KLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAG 140
               +  + ++   + ++  ++    +E  + +    D ++L+AG
Sbjct: 54519 GSRQGEYEEMGGSTSKATQKATVRRECSESISSTQDQESLQAG 54647


>dbj|AP006489.2| Cyanidioschyzon merolae DNA, chromosome 7, complete genome, complete
              sequence
          Length = 584452

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 13/58 (22%), Positives = 32/58 (55%)
 Frame = -2

Query: 120    REQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSD 177
              +E+E ++ +   N+ D  + G+  + T+ ++     P+  ++SHI++NK  +  +  D
Sbjct: 377670 QEKEMEQTLSDKNETDRQRRGRAGTGTNGRVI----PDAVSRSHIQKNKHGECFKMQD 377509


>dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, complete genome, complete
              sequence
          Length = 852727

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -2

Query: 133    DHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKP 172
              DHD +  GK++   +   D+ P P +   +H+   + + P
Sbjct: 413508 DHDLINTGKSRYLRATDADRLPSPRE*WMNHVAGARSTHP 413389


>dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete
             sequence
          Length = 1253087

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 95    VAMERARKKLQDRHDAAAREHEERLREQEEQ 125
             +A+       Q +H A AREHE+R R +  Q
Sbjct: 48695 LALHHHHHHQQQQHQARAREHEQRRRVRTHQ 48787


>dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, complete genome, complete
              sequence
          Length = 859119

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -3

Query: 72     FGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHD--AAAREHEERLREQEEQKRMQ 129
              F   +   + T    PE ++     +  ARK L D  +  A ARE E++   + EQKR+ 
Sbjct: 257236 FADAERQLEATRGKRPELLDM----LRTARKALADYEEEQARAREKEQKKLLKREQKRLG 257069

Query: 130    KI 131
              K+
Sbjct: 257068 KL 257063


>dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, complete genome, complete
              sequence
          Length = 902900

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
 Frame = -3

Query: 93     RSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDA----LKAGKTQSKTSK 148
              RSV +++    L  +HD+A + +E      + ++++Q++ +H A    L+ G    KT  
Sbjct: 615135 RSVELDQLTAFLCQQHDSAPQSYE------DARQQLQQLCEHSAGWCWLEKGSASGKTLF 614974

Query: 149    KLDQKPDPNQATQSHIK----RNKESKPLRSSDFSPLGGGPSNSA 189
              +++   D N   +  +      ++  K ++ +D +    GPS SA
Sbjct: 614973 RIN--ADRNAFREMRLALTSLLSELRKQIQLNDTAGRNEGPSRSA 614845


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.312    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,716,613
Number of Sequences: 20
Number of extensions: 46723
Number of successful extensions: 363
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 244
length of query: 204
length of database: 5,515,582
effective HSP length: 91
effective length of query: 113
effective length of database: 5,513,762
effective search space: 623055106
effective search space used: 623055106
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)